Only apply include labels filter if include_labels not empty #827
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edeno
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Feb 12, 2024
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I think this runs into this warning:
DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.Since include_labels is a numpy array. But changing it to include_labels.size > 0 should work
You're right, I forgot it was made into a np array above |
edeno
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Feb 12, 2024
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Feb 20, 2024
* Fault-permit insert and remove mutual exclusivity protections on Merge (#824) * #719, #804, #212 * #768 * Add merge delete and populate * Changes following PR review @edeno * Replace delayed import of ImportedSpikeSorting * Update CITATION.cff (#826) * Update CITATION.cff * Update change log * Update ref * Add MUA notebook and fix numbering. * Only apply include labels filter if include_labels not empty (#827) * dont skip unit if include_labels list is empty * update check for np array size * gh-actions docs fixes (#828) * Update 'latest' in docs deploy * Docs bugfix. Rename Link action, incorporate cspell. * MUA as own heading * Update README.md * Fix citation * Fix citation * include all relevant restrictions on video file * Proposed structure for user roles. (#832) * Add roles * Remove use of unix user group. Add note for retroactive role assign * Add docs on roles and external tables. Reduce key length * Fix test for update of position tools (#835) Related to single LED halving the data bug * fix build error in mamba and restriction for dlc * flush stdout before converting mp4 * Fix notebook name (#840) * remove deprecated yaml.safe_load function * Fix test * replace deprecated yaml.safe_load function * only call no_transaction_make if video key not present --------- Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu> Co-authored-by: Eric Denovellis <edeno@users.noreply.github.com> Co-authored-by: Eric Denovellis <edeno@bu.edu>
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Feb 21, 2024
* allow for multicamera epochs * change VideoFile definition * update video_file_num iteration * add update methods * change VideoFile restriction in get_video_path * modify formatting in position_dlc_project * allow selective video selection in pose estimation * add NotImplementedError to DLCProject insert * allow for video file addition after proj creation * fix add_video_files * fix video_file_num determination in VideoFile * modify add_video_files method * change call to add_video_files * modify interval_list_name call * Fix linting errors * Tested DLC multicam pipeline (#841) * Fault-permit insert and remove mutual exclusivity protections on Merge (#824) * #719, #804, #212 * #768 * Add merge delete and populate * Changes following PR review @edeno * Replace delayed import of ImportedSpikeSorting * Update CITATION.cff (#826) * Update CITATION.cff * Update change log * Update ref * Add MUA notebook and fix numbering. * Only apply include labels filter if include_labels not empty (#827) * dont skip unit if include_labels list is empty * update check for np array size * gh-actions docs fixes (#828) * Update 'latest' in docs deploy * Docs bugfix. Rename Link action, incorporate cspell. * MUA as own heading * Update README.md * Fix citation * Fix citation * include all relevant restrictions on video file * Proposed structure for user roles. (#832) * Add roles * Remove use of unix user group. Add note for retroactive role assign * Add docs on roles and external tables. Reduce key length * Fix test for update of position tools (#835) Related to single LED halving the data bug * fix build error in mamba and restriction for dlc * flush stdout before converting mp4 * Fix notebook name (#840) * remove deprecated yaml.safe_load function * Fix test * replace deprecated yaml.safe_load function * only call no_transaction_make if video key not present --------- Co-authored-by: dpeg22 <dpeg22@gmail.com> Co-authored-by: CBroz1 <CBrozdowski@yahoo.com> Co-authored-by: Samuel Bray <sam.bray@ucsf.edu> Co-authored-by: Chris Brozdowski <Chris.Broz@ucsf.edu>
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Description
Small bug fix in
SortedSpikesGroup.filter_units()include_labelsis non-empty, unit labels must have at least one label from this list to pass filteringinclude_labelscaseChecklist:
CITATION.cffCHANGELOG.md